Cover Image

Isfahan MISP dataset

Masoud Kashefpur, Rahele Kafieh, Sahar Jorjandi, Hadis Golmohammadi, Zahra Khodabande, Mohammadreza Abbasi, Ali Akbar Fakharzadeh, Maryam Kashefpoor, Hossein Rabbani

DOI:

Abstract


An online depository was introduced to share clinical ground truth with the public and provide open access for researchers to evaluate their computer-aided algorithms. PHP was used for web programming and MySQL for database managing. The website was entitled “biosigdata.com.†It was a fast, secure, and easy-to-use online database for medical signals and images. Freely registered users could download the datasets and could also share their own supplementary materials while maintaining their privacies (citation and fee). Commenting was also available for all datasets, and automatic sitemap and semiautomatic SEO indexing have been set for the site. A comprehensive list of available websites for medical datasets is also presented as a Supplementary.

Keywords


Algorithms, computers, dataset, online

Full Text:

PDF PDF

References


Horsch A, Hapfelmeier A, Elter M. Needs assessment for next generation computer-aided mammography reference image databases and evaluation studies. Int J Comput Assist Radiol Surg 2011;6:749-67.

Horsch A, Prinz M, Schneider S, Sipila O, Spinnler K, Vallee J-P, et al. Establishing an international reference image database for research and development in medical image processing. Bildverarb Med 2003;363-7.

Horsch A, Blank R, Eigenmann D, editors. EFMI Reference Image Database Initiative: Concept, State and Related Work. International Congress Series; 2005: Elsevier.

Deserno TM, Welter P, Horsch A. Towards a repository for standardized medical image and signal case data annotated with ground truth. J Digit Imaging 2012;25:213-26.

Kafieh R, Rabbani H, Abramoff MD, Sonka M. Intra-retinal layer segmentation of 3D optical coherence tomography using coarse grained diffusion map. Med Image Anal 2013;17:907-28.

Kafieh R, Rabbani H, Abramoff MD, Sonka M. Curvature correction of retinal OCTs using graph-based geometry detection. Phys Med Biol 2013;58:2925-38.

Kafieh R, Rabbani H, Selesnick I. Three dimensional data-driven multi scale atomic representation of optical coherence tomography. IEEE Trans Med Imaging 2015;34:1042-62.

Kafieh R, Rabbani H, Hajizadeh F, Ommani M. An accurate multimodal 3D vessel segmentation method based on brightness variations on OCT layers and curvelet domain fundus image analysis. IEEE Trans Biomed Eng 2013;60: 2815-23.

Kafieh R, Rabbani H, Hajizadeh F, Abramoff MD, Sonka M. Thickness mapping of eleven retinal layers segmented using the diffusion maps method in normal eyes. J Ophthalmol 2015;2015: 259123.

Danesh H, Kafieh R, Rabbani H, Hajizadeh F. Segmentation of choroidal boundary in enhanced depth imaging OCTs using a multiresolution texture based modeling in graph cuts. Comput Math Methods Med 2014;2014:479268.

Jahromi MK, Kafieh R, Rabbani H, Dehnavi AM, Peyman A, Hajizadeh F, et al. An automatic algorithm for segmentation of the boundaries of corneal layers in optical coherence tomography images using Gaussian mixture model. J Med Signals Sens 2014;4:171-80.

Rabbani H, Kafieh R, Kazemian Jahromi M, Jorjandi S, Mehri Dehnavi A, Hajizadeh F, et al. Obtaining thickness maps of corneal layers using the optimal algorithm for intracorneal layer segmentation. Int J Biomed Imaging 2016;2016:1420230.

Golabbakhsh M, Rajaei A, Derakhshan M, Sadri S, Taheri M, Adibi P. Automated acoustic analysis in detection of spontaneous swallows in Parkinson’s disease. Dysphagia 2014;29:572-7.

Rezaei F, Omrani MR, Abnavi F, Mojiri F, Golabbakhsh M, Barati S, et al. Computerized analysis of acoustic characteristics of patients with internal nasal valve collapse before and after functional rhinoplasty. J Med Signals Sens 2015;5:210-9.

Boersma P, Weenink D. Praat: Doing Phonetics by Computer [Computer Program]. Version 5.0.23; 2015. Available from: http://www.praat.org/. [Last accessed on 2015 Apr 15].


Refbacks

  • There are currently no refbacks.